Package: escape2024 0.0.1
Ka Yin Leung
escape2024: Code accompanying the deliverable D4.1 of the ESCAPE project, 2024
The package simulates SEIR epidemics for the mass action model and configuration network model that are described by ordinary differential equations. It contains functionality to calculates theoretical basic reproduction number and final size for the epidemic models. Scripts are included to produce the results presented in the 2024 deliverable D4.1 of the ESCAPE project.
Authors:
escape2024_0.0.1.tar.gz
escape2024_0.0.1.zip(r-4.7)escape2024_0.0.1.zip(r-4.6)escape2024_0.0.1.zip(r-4.5)
escape2024_0.0.1.tgz(r-4.6-any)escape2024_0.0.1.tgz(r-4.5-any)
escape2024_0.0.1.tar.gz(r-4.7-any)escape2024_0.0.1.tar.gz(r-4.6-any)
escape2024_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
escape2024/json (API)
| # Install 'escape2024' in R: |
| install.packages('escape2024', repos = c('https://jgf5013.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jgf5013/escape2024/issues
Last updated from:6760ec7859. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 104 | ||
| source / vignettes | OK | 134 | ||
| linux-release-x86_64 | WARNING | 101 | ||
| macos-release-arm64 | WARNING | 127 | ||
| macos-oldrel-arm64 | WARNING | 144 | ||
| windows-devel | WARNING | 85 | ||
| windows-release | WARNING | 64 | ||
| windows-oldrel | WARNING | 81 | ||
| wasm-release | OK | 97 |
Exports:.kernel_capital_curly_f.kernel_capital_curly_f_derivative.kernel_captial_curly_f_inf_limit.ode_model_network_seir.ode_model_network_sir.ode_model_referencefinal_sizehelper_g_functionhelper_g_function_derivativeinitial_xmean_degreemean_excess_degreemodel_networkmodel_network_seirmodel_network_sirmodel_referencemodels_combinedprobability_generating_functionsimulate_outbreak_seir_networksimulate_outbreak_seir_referencesimulate_outbreak_sir_networktheory_network_final_sizetheory_network_growth_ratetheory_network_reproduction_numbertheory_reference_final_sizetheory_reference_growth_ratetheory_reference_reproduction_numbervar_degree
Dependencies:jsonlitePBSddesolve
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| F(tau) function | .kernel_capital_curly_f |
| Derivative F'(tau) | .kernel_capital_curly_f_derivative |
| Title | .kernel_captial_curly_f_inf_limit |
| Title | .ode_model_network_seir |
| Title | .ode_model_network_sir |
| Title | .ode_model_reference |
| Title | final_size |
| G'(x) / G'(1) = G'(x) / , = mean degree, G(x) probability generating function | helper_g_function |
| Derivative of helper_g_function G''(x) / G'(1) = G''(x) / , = mean degree, G(x) probability generating function | helper_g_function_derivative |
| Title | initial_x |
| Title | mean_degree |
| Title | mean_excess_degree |
| Title | model_network |
| Title | model_network_seir |
| Title | model_network_sir |
| Title | model_reference |
| Title | models_combined |
| Title | probability_generating_function |
| Title | simulate_outbreak_seir_network |
| Title | simulate_outbreak_seir_reference |
| Title | simulate_outbreak_sir_network |
| Title | theory_network_final_size |
| Title | theory_network_growth_rate |
| Title | theory_network_reproduction_number |
| Title | theory_reference_final_size |
| Title | theory_reference_growth_rate |
| Title | theory_reference_reproduction_number |
| Title | var_degree |
